Variant report

Variant	rs11057435
Chromosome Location	chr12:124540983-124540984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10846587	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10846588	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10846590	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10846594	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10846595	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10846596	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10846598	0.80[EUR][1000 genomes]
rs11057416	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11057417	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11057423	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11057424	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11057428	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11057431	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11057432	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11057440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11057444	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11057445	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11057446	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11057447	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11057449	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11611852	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12367007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1402332	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs55835646	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs825466	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899580	chr12:124499542-124565258	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv455734	chr12:124511908-124772515	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv560538	chr12:124511908-124772515	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124538600-124542200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr12:124538800-124542800	Weak transcription	Stomach Mucosa	stomach
3	chr12:124539200-124542000	Weak transcription	Fetal Lung	lung
4	chr12:124539200-124542200	Weak transcription	Fetal Brain Male	brain
5	chr12:124539200-124542200	Weak transcription	Fetal Stomach	stomach
6	chr12:124539200-124542400	Weak transcription	Fetal Brain Female	brain
7	chr12:124539200-124542400	Weak transcription	Fetal Muscle Leg	muscle
8	chr12:124539400-124541800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr12:124539400-124549600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr12:124540200-124542600	Weak transcription	Fetal Kidney	kidney

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