Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF664-2	chr12:124570308-124573142	ENSG00000269923.1

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10846587	0.84[EUR][1000 genomes]
rs10846588	0.84[EUR][1000 genomes]
rs10846590	1.00[AFR][1000 genomes]
rs10846594	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10846595	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10846596	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11057416	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11057417	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11057423	0.84[EUR][1000 genomes]
rs11057424	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11057428	0.86[EUR][1000 genomes]
rs11057431	0.85[EUR][1000 genomes]
rs11057432	0.84[EUR][1000 genomes]
rs11057435	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11057440	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11057444	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11057445	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11057446	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11057449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11611852	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12367007	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1402332	0.82[CEU][hapmap];1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs55835646	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455734	chr12:124511908-124772515	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv560538	chr12:124511908-124772515	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv520633	chr12:124548394-124683205	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv518962	chr12:124561803-124583446	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124559600-124571000	Weak transcription	Fetal Intestine Small	intestine
2	chr12:124562400-124577400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr12:124565800-124572200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:124568600-124592000	Weak transcription	Right Atrium	heart
5	chr12:124570000-124571000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:124570000-124573800	Enhancers	Fetal Stomach	stomach
7	chr12:124570000-124577000	Weak transcription	Pancreas	Pancrea
8	chr12:124570200-124577800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr12:124570400-124571000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:124570400-124571000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr12:124570400-124573400	Enhancers	Fetal Brain Male	brain
12	chr12:124570600-124571600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr12:124570800-124571000	Enhancers	Brain Germinal Matrix	brain
14	chr12:124570800-124582200	Weak transcription	Fetal Brain Female	brain

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