Variant report

Variant	rs10857614
Chromosome Location	chr10:49829983-49829984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10776629	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10776630	0.90[EUR][1000 genomes]
rs10776631	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10776632	0.96[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10857612	0.89[EUR][1000 genomes]
rs10857613	0.96[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11817962	0.81[AFR][1000 genomes]
rs1822861	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes]
rs2377522	0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes]
rs2377523	0.91[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34939981	0.90[EUR][1000 genomes]
rs3844493	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3845284	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3853123	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3910909	0.87[EUR][1000 genomes]
rs3910910	0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes]
rs3910911	0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes]
rs3910912	0.87[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap]
rs4838428	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4838429	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7904633	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10857614	C10orf71	cis	parietal	SCAN
rs10857614	ARHGAP22	cis	Artery Tibial	GTEx
rs10857614	ARHGAP22	cis	Whole Blood	GTEx
rs10857614	ARHGAP22	cis	Artery Aorta	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49813400-49844200	Weak transcription	Pancreas	Pancrea
2	chr10:49823000-49830800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:49823400-49832000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:49827600-49831600	Weak transcription	NHDF-Ad	bronchial
5	chr10:49828800-49841400	Weak transcription	Aorta	Aorta
6	chr10:49829000-49831200	Weak transcription	Right Atrium	heart

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