Variant report

Variant	rs3910910
Chromosome Location	chr10:49842655-49842656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10776629	0.88[EUR][1000 genomes]
rs10776630	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10776631	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10776632	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10857612	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10857613	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10857614	0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes]
rs1822861	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2377522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2377523	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2377595	0.82[EUR][1000 genomes]
rs2377596	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34939981	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3844493	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3845284	0.83[EUR][1000 genomes]
rs3853123	0.88[EUR][1000 genomes]
rs3910909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3910911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3910912	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs4838428	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4838429	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7904633	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3910910	ARHGAP22	cis	Artery Aorta	GTEx
rs3910910	ARHGAP22	cis	Artery Tibial	GTEx
rs3910910	ARHGAP22	cis	Whole Blood	GTEx

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49813400-49844200	Weak transcription	Pancreas	Pancrea
2	chr10:49831600-49843400	Weak transcription	Right Atrium	heart
3	chr10:49840000-49842800	Enhancers	HSMMtube	muscle
4	chr10:49840200-49848600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:49840400-49845000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr10:49840800-49844000	Enhancers	Primary hematopoietic stem cells	blood
7	chr10:49840800-49844400	Enhancers	NHDF-Ad	bronchial
8	chr10:49841000-49843200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr10:49841000-49843400	Enhancers	Primary B cells from peripheral blood	blood
10	chr10:49841000-49843800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:49841000-49844000	Enhancers	Dnd41	blood
12	chr10:49841000-49845200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:49841200-49843200	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr10:49841400-49843000	Enhancers	Primary B cells from cord blood	blood
15	chr10:49841400-49843400	Enhancers	Aorta	Aorta
16	chr10:49841600-49843000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr10:49841600-49843400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:49841600-49843400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr10:49841600-49843800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
20	chr10:49841600-49843800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:49841600-49844600	Enhancers	Fetal Thymus	thymus
22	chr10:49841800-49842800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:49841800-49843200	Enhancers	Primary T cells from cord blood	blood
24	chr10:49841800-49843200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr10:49841800-49843400	Enhancers	Right Ventricle	heart
26	chr10:49841800-49843400	Enhancers	Spleen	Spleen
27	chr10:49842000-49843000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:49842000-49843000	Flanking Active TSS	GM12878-XiMat	blood
29	chr10:49842000-49843200	Enhancers	NH-A	brain
30	chr10:49842000-49843200	Flanking Active TSS	Osteobl	bone
31	chr10:49842000-49843400	Enhancers	Brain Angular Gyrus	brain
32	chr10:49842000-49843400	Enhancers	NHLF	lung
33	chr10:49842000-49844400	Enhancers	Brain Substantia Nigra	brain
34	chr10:49842000-49844800	Enhancers	Adipose Nuclei	Adipose
35	chr10:49842000-49859400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr10:49842200-49842800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr10:49842200-49843000	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr10:49842200-49843200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr10:49842200-49843400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:49842400-49842800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr10:49842400-49842800	Enhancers	Muscle Satellite Cultured Cells	--
42	chr10:49842400-49842800	Weak transcription	Duodenum Mucosa	Duodenum
43	chr10:49842400-49842800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr10:49842400-49843200	Enhancers	Left Ventricle	heart
45	chr10:49842400-49843400	Enhancers	Brain Cingulate Gyrus	brain
46	chr10:49842400-49843400	Weak transcription	Fetal Muscle Leg	muscle
47	chr10:49842400-49843600	Bivalent Enhancer	Placenta	Placenta
48	chr10:49842400-49844800	Enhancers	Brain Hippocampus Middle	brain
49	chr10:49842600-49842800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr10:49842600-49842800	Enhancers	Brain Inferior Temporal Lobe	brain

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