Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10075686	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1017790	0.91[EUR][1000 genomes]
rs11956053	0.95[EUR][1000 genomes]
rs11959015	0.94[EUR][1000 genomes]
rs13166122	0.91[EUR][1000 genomes]
rs13166291	0.91[EUR][1000 genomes]
rs13174360	0.92[EUR][1000 genomes]
rs1368415	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1368417	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1428509	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1432988	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1432993	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1433001	0.88[EUR][1000 genomes]
rs1541914	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1821265	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2115255	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2861144	0.91[EUR][1000 genomes]
rs4291038	0.88[EUR][1000 genomes]
rs6556816	0.88[EUR][1000 genomes]
rs6887968	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7701025	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7701982	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7734343	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv883093	chr5:164685326-164931799	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164761800-164769000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:164768200-164768800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:164768400-164769000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr5:164768400-164769200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:164768400-164769200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:164768600-164769200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:164768600-164769400	Enhancers	Primary hematopoietic stem cells short term culture	blood

Quick Search: