Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10075686	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1017790	0.87[EUR][1000 genomes]
rs10866753	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11956053	0.86[EUR][1000 genomes]
rs11959015	0.85[EUR][1000 genomes]
rs13166122	0.87[EUR][1000 genomes]
rs13166291	0.87[EUR][1000 genomes]
rs13174360	0.83[EUR][1000 genomes]
rs1368415	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1368417	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1428509	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1432988	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1432993	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1433001	0.84[EUR][1000 genomes]
rs1541914	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1821265	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2115255	0.80[EUR][1000 genomes]
rs2861144	0.88[EUR][1000 genomes]
rs6556816	0.84[EUR][1000 genomes]
rs6887968	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7701025	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7734343	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv883093	chr5:164685326-164931799	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164769000-164778800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr5:164775800-164779400	Weak transcription	Fetal Brain Male	brain
3	chr5:164777200-164787200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr5:164778400-164779600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:164778400-164779800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:164778400-164780400	Enhancers	Brain Germinal Matrix	brain
7	chr5:164778600-164779000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:164778600-164779200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr5:164778600-164779600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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