Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10075686	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1017790	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10866753	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11956053	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11959015	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12153272	0.88[ASN][1000 genomes]
rs13166122	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13166291	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13174360	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13190045	0.95[ASN][1000 genomes]
rs1368415	0.82[EUR][1000 genomes]
rs1428509	0.80[EUR][1000 genomes]
rs1432988	0.81[EUR][1000 genomes]
rs1432993	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1433001	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1541914	0.82[EUR][1000 genomes]
rs1821265	0.82[EUR][1000 genomes]
rs2861144	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4291038	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6556816	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6887968	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7701982	0.80[EUR][1000 genomes]
rs7734343	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv526419	chr5:164675241-164755174	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	lncRNA	n/a	inside rSNPs	diseases
6	nsv883093	chr5:164685326-164931799	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164745800-164747000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:164746000-164746800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr5:164746200-164747400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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