Variant report

Variant	rs1432993
Chromosome Location	chr5:164756109-164756110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10075686	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1017790	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10866753	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11956053	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11959015	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13166122	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13166291	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13174360	0.93[EUR][1000 genomes]
rs1368415	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1368417	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1428509	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1432988	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1433001	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1541914	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1821265	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2115255	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2861144	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4291038	0.89[EUR][1000 genomes]
rs6556816	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6887968	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7701025	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7701982	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7734343	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv883093	chr5:164685326-164931799	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164752800-164760400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:164753000-164760800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:164753200-164760800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:164753400-164760400	Weak transcription	NHEK	skin
5	chr5:164755600-164756400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:164755600-164756600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:164755800-164756600	Enhancers	HUVEC	blood vessel
8	chr5:164755800-164756800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:164756000-164760800	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links