Variant report

Variant	rs10868051
Chromosome Location	chr9:86350632-86350633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10124390	0.83[CHB][hapmap]
rs10868055	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10868058	0.96[CEU][hapmap];0.96[CHB][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11140240	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11792634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12349272	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13285946	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2065516	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2780142	0.89[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs295270	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs295274	1.00[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap]
rs295279	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs295288	0.83[EUR][1000 genomes]
rs295291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs427314	0.88[EUR][1000 genomes]
rs4297107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4877803	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6559750	0.92[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap]
rs7020920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7026436	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs72749110	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7851636	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7855503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7869387	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7875289	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs9314723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044639	chr9:86252505-86412041	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv893513	chr9:86298632-86433459	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv973432	chr9:86330626-86371524	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86347400-86354200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:86347800-86366200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr9:86348400-86415400	Weak transcription	Fetal Heart	heart
4	chr9:86350000-86431600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:86350200-86374600	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:86350600-86352400	Weak transcription	Primary T cells from cord blood	blood
7	chr9:86350600-86352800	Weak transcription	Primary hematopoietic stem cells	blood

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