Variant report

Variant	rs10868058
Chromosome Location	chr9:86390484-86390485
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86390406..86391965-chr9:86395026..86397435,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10868051	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10868055	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11140240	0.89[CEU][hapmap];0.96[CHB][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11792634	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12349272	0.96[CEU][hapmap];0.96[CHB][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1572031	0.92[CEU][hapmap];0.91[CHB][hapmap]
rs2065516	0.92[CEU][hapmap];0.91[CHB][hapmap]
rs2780142	0.85[CEU][hapmap];0.91[CHB][hapmap]
rs295274	0.96[CEU][hapmap];0.91[CHB][hapmap]
rs295279	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs295291	0.96[CEU][hapmap];0.96[CHB][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs296885	0.92[CEU][hapmap];0.91[CHB][hapmap]
rs427314	0.81[EUR][1000 genomes]
rs4297107	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4877803	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6559750	0.89[CEU][hapmap];0.91[CHB][hapmap]
rs7020920	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7026436	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs72749110	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7851636	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7855503	0.96[CEU][hapmap];0.96[CHB][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7869387	0.92[CEU][hapmap];0.91[CHB][hapmap]
rs7875289	0.88[CEU][hapmap];0.91[CHB][hapmap]
rs9314723	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044639	chr9:86252505-86412041	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv893513	chr9:86298632-86433459	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86348400-86415400	Weak transcription	Fetal Heart	heart
2	chr9:86350000-86431600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:86350800-86407000	Weak transcription	Primary B cells from cord blood	blood
4	chr9:86351000-86393200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr9:86352000-86411800	Weak transcription	Ovary	ovary
6	chr9:86352600-86398200	Weak transcription	Fetal Brain Female	brain
7	chr9:86353000-86432000	Weak transcription	Lung	lung
8	chr9:86357800-86398800	Weak transcription	Pancreas	Pancrea
9	chr9:86363800-86412400	Weak transcription	HepG2	liver
10	chr9:86363800-86431200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr9:86364800-86412000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr9:86364800-86413400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr9:86367000-86413600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr9:86367200-86397600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr9:86367400-86411800	Weak transcription	Brain Substantia Nigra	brain
16	chr9:86367600-86412000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr9:86367800-86397000	Weak transcription	Fetal Stomach	stomach
18	chr9:86367800-86397800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:86368000-86398200	Weak transcription	Left Ventricle	heart
20	chr9:86368000-86398800	Weak transcription	Aorta	Aorta
21	chr9:86371600-86397000	Weak transcription	Fetal Intestine Small	intestine
22	chr9:86373200-86411800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr9:86376600-86397800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:86376600-86397800	Weak transcription	Primary hematopoietic stem cells	blood
25	chr9:86377000-86412600	Weak transcription	Brain Anterior Caudate	brain
26	chr9:86377200-86397800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr9:86377200-86432000	Weak transcription	Gastric	stomach
28	chr9:86378200-86398200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr9:86378400-86418400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr9:86379600-86397000	Weak transcription	Liver	Liver
31	chr9:86379600-86398800	Weak transcription	Thymus	Thymus
32	chr9:86380000-86398000	Weak transcription	Adipose Nuclei	Adipose
33	chr9:86380200-86393200	Weak transcription	Brain Angular Gyrus	brain
34	chr9:86380200-86431600	Weak transcription	Fetal Kidney	kidney
35	chr9:86381400-86411800	Weak transcription	Brain Hippocampus Middle	brain
36	chr9:86383600-86425800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr9:86384800-86397800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr9:86385000-86397200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr9:86385400-86409200	Weak transcription	Primary T cells from cord blood	blood
40	chr9:86386400-86398800	Weak transcription	Fetal Thymus	thymus
41	chr9:86388000-86398800	Weak transcription	Fetal Muscle Leg	muscle
42	chr9:86388200-86398200	Weak transcription	Fetal Intestine Large	intestine
43	chr9:86388200-86411400	Weak transcription	Fetal Muscle Trunk	muscle
44	chr9:86389000-86398800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr9:86389000-86431600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr9:86389200-86400200	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr9:86390200-86398800	Weak transcription	Right Ventricle	heart

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