Variant report

Variant	rs10868055
Chromosome Location	chr9:86370981-86370982
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10868051	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10868058	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11140240	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11792634	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12349272	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13285946	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2780142	0.82[EUR][1000 genomes]
rs295270	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs295279	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs295288	0.81[EUR][1000 genomes]
rs295291	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs427314	0.87[EUR][1000 genomes]
rs4297107	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4877803	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7020920	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72749110	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7851636	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7855503	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9314723	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044639	chr9:86252505-86412041	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv893513	chr9:86298632-86433459	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv973432	chr9:86330626-86371524	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86348400-86415400	Weak transcription	Fetal Heart	heart
2	chr9:86350000-86431600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:86350200-86374600	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:86350800-86407000	Weak transcription	Primary B cells from cord blood	blood
5	chr9:86351000-86393200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:86351400-86371000	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:86352000-86411800	Weak transcription	Ovary	ovary
8	chr9:86352600-86377800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr9:86352600-86398200	Weak transcription	Fetal Brain Female	brain
10	chr9:86352800-86383200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:86353000-86432000	Weak transcription	Lung	lung
12	chr9:86354800-86380800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr9:86357800-86398800	Weak transcription	Pancreas	Pancrea
14	chr9:86362600-86376200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr9:86362800-86374800	Weak transcription	Gastric	stomach
16	chr9:86362800-86376400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:86363800-86412400	Weak transcription	HepG2	liver
18	chr9:86363800-86431200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr9:86364800-86412000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr9:86364800-86413400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr9:86365600-86372000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr9:86365600-86375200	Weak transcription	Brain Germinal Matrix	brain
23	chr9:86366400-86375600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:86367000-86413600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr9:86367200-86397600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr9:86367400-86374000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr9:86367400-86411800	Weak transcription	Brain Substantia Nigra	brain
28	chr9:86367600-86374600	Weak transcription	Liver	Liver
29	chr9:86367600-86375800	Weak transcription	Fetal Intestine Large	intestine
30	chr9:86367600-86376200	Weak transcription	Primary T cells from cord blood	blood
31	chr9:86367600-86376400	Weak transcription	Brain Hippocampus Middle	brain
32	chr9:86367600-86412000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr9:86367800-86374200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr9:86367800-86376800	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr9:86367800-86397000	Weak transcription	Fetal Stomach	stomach
36	chr9:86367800-86397800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr9:86368000-86373600	Weak transcription	Fetal Thymus	thymus
38	chr9:86368000-86379200	Weak transcription	Thymus	Thymus
39	chr9:86368000-86398200	Weak transcription	Left Ventricle	heart
40	chr9:86368000-86398800	Weak transcription	Aorta	Aorta
41	chr9:86370800-86371600	Strong transcription	Fetal Intestine Small	intestine
42	chr9:86370800-86379600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links