Variant report

Variant	rs7855503
Chromosome Location	chr9:86381638-86381639
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86337822..86339937-chr9:86378973..86382818,3	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10124390	0.83[CHB][hapmap]
rs10868051	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10868055	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10868058	0.96[CEU][hapmap];0.96[CHB][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11140240	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11792634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12349272	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13285946	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1572030	0.83[CHB][hapmap]
rs1572031	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2065516	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2780142	0.89[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs295270	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs295274	1.00[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap]
rs295275	0.81[EUR][1000 genomes]
rs295279	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs295288	0.85[EUR][1000 genomes]
rs295291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs427314	0.90[EUR][1000 genomes]
rs4297107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4877803	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6559750	0.92[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap]
rs7020920	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7026436	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs72749110	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7851636	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7869387	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7875289	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs9314723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044639	chr9:86252505-86412041	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv893513	chr9:86298632-86433459	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86348400-86415400	Weak transcription	Fetal Heart	heart
2	chr9:86350000-86431600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:86350800-86407000	Weak transcription	Primary B cells from cord blood	blood
4	chr9:86351000-86393200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr9:86352000-86411800	Weak transcription	Ovary	ovary
6	chr9:86352600-86398200	Weak transcription	Fetal Brain Female	brain
7	chr9:86352800-86383200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr9:86353000-86432000	Weak transcription	Lung	lung
9	chr9:86357800-86398800	Weak transcription	Pancreas	Pancrea
10	chr9:86363800-86412400	Weak transcription	HepG2	liver
11	chr9:86363800-86431200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr9:86364800-86412000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr9:86364800-86413400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr9:86367000-86413600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr9:86367200-86397600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:86367400-86411800	Weak transcription	Brain Substantia Nigra	brain
17	chr9:86367600-86412000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr9:86367800-86397000	Weak transcription	Fetal Stomach	stomach
19	chr9:86367800-86397800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:86368000-86398200	Weak transcription	Left Ventricle	heart
21	chr9:86368000-86398800	Weak transcription	Aorta	Aorta
22	chr9:86371600-86397000	Weak transcription	Fetal Intestine Small	intestine
23	chr9:86373200-86411800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr9:86376600-86397800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:86376600-86397800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr9:86377000-86412600	Weak transcription	Brain Anterior Caudate	brain
27	chr9:86377200-86397800	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr9:86377200-86432000	Weak transcription	Gastric	stomach
29	chr9:86378200-86384400	Weak transcription	Primary T cells from cord blood	blood
30	chr9:86378200-86398200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr9:86378400-86418400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr9:86379600-86384800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr9:86379600-86397000	Weak transcription	Liver	Liver
34	chr9:86379600-86398800	Weak transcription	Thymus	Thymus
35	chr9:86380000-86398000	Weak transcription	Adipose Nuclei	Adipose
36	chr9:86380200-86393200	Weak transcription	Brain Angular Gyrus	brain
37	chr9:86380200-86431600	Weak transcription	Fetal Kidney	kidney
38	chr9:86381400-86411800	Weak transcription	Brain Hippocampus Middle	brain

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