Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:139693524..139696523-chr6:139813770..139815573,2	K562	blood:
2	chr6:139809853..139812298-chr6:139813287..139815941,2	MCF-7	breast:
3	chr6:139812402..139815311-chr6:139816711..139818432,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11155070	0.81[AMR][1000 genomes]
rs1468708	0.81[AMR][1000 genomes]
rs1468709	0.83[AMR][1000 genomes]
rs2908512	0.92[ASN][1000 genomes]
rs2908513	0.92[ASN][1000 genomes]
rs2908517	0.87[ASN][1000 genomes]
rs3010285	0.84[ASN][1000 genomes]
rs4896461	0.81[AMR][1000 genomes]
rs4896463	0.83[AMR][1000 genomes]
rs4896464	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6570344	0.81[AMR][1000 genomes]
rs6916887	0.81[AMR][1000 genomes]
rs6923416	0.81[AMR][1000 genomes]
rs6926031	0.81[AMR][1000 genomes]
rs71543295	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7770257	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376420	0.82[AMR][1000 genomes]
rs9376421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9376422	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9376423	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9389689	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9399282	0.85[AMR][1000 genomes]
rs9403080	0.83[AMR][1000 genomes]
rs9403081	0.90[EUR][1000 genomes]
rs9403082	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9403083	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9403084	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9495502	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	esv3474279	chr6:139813411-139815075	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3474280	chr6:139813411-139815075	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1026819	chr6:139813809-139834012	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139804000-139818200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:139812000-139817600	Weak transcription	HepG2	liver

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