Variant report

Variant	rs2908512
Chromosome Location	chr6:139821434-139821435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10872516	0.92[ASN][1000 genomes]
rs2908513	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2908517	0.94[ASN][1000 genomes]
rs2908521	0.84[ASN][1000 genomes]
rs3010282	0.84[ASN][1000 genomes]
rs3010285	0.91[ASN][1000 genomes]
rs3010286	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4896464	0.93[ASN][1000 genomes]
rs7770257	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9376421	0.93[ASN][1000 genomes]
rs9376422	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9376423	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9389689	0.93[ASN][1000 genomes]
rs9403082	0.93[ASN][1000 genomes]
rs9403083	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9403084	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9495502	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1026819	chr6:139813809-139834012	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139815800-139822800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:139820000-139821600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:139821000-139822600	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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