Variant report

Variant	rs10873085
Chromosome Location	chr14:55166335-55166336
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55160231..55162870-chr14:55164984..55167932,2	MCF-7	breast:
2	chr14:55164669..55167412-chr14:55171314..55173004,2	MCF-7	breast:
3	chr14:55165914..55167490-chr14:55368015..55370010,2	MCF-7	breast:
4	chr14:55164335..55167083-chr14:55167494..55169213,2	MCF-7	breast:
5	chr14:55165172..55166769-chr14:55243179..55246172,2	K562	blood:
6	chr14:55030759..55039196-chr14:55155352..55168435,18	MCF-7	breast:
7	chr14:55031742..55034197-chr14:55164972..55166967,2	MCF-7	breast:
8	chr14:55158003..55159901-chr14:55164880..55166832,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000020577	Chromatin interaction
ENSG00000131979	Chromatin interaction

rs_ID	r²[population]
rs17127740	1.00[EUR][1000 genomes]
rs17127743	1.00[EUR][1000 genomes]
rs17127752	1.00[EUR][1000 genomes]
rs17127755	1.00[EUR][1000 genomes]
rs28418605	1.00[EUR][1000 genomes]
rs28532361	1.00[EUR][1000 genomes]
rs57571275	1.00[EUR][1000 genomes]
rs60333237	1.00[EUR][1000 genomes]

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55120000-55179400	Weak transcription	Fetal Intestine Small	intestine
2	chr14:55152800-55178400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr14:55153000-55174600	Weak transcription	Colonic Mucosa	Colon
4	chr14:55153000-55197000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:55154400-55178800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:55154600-55178600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr14:55154800-55178600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr14:55155400-55179000	Weak transcription	NH-A	brain
9	chr14:55158000-55168800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr14:55158200-55170200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:55159200-55174400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr14:55159400-55168800	Weak transcription	Osteobl	bone
13	chr14:55159400-55174400	Weak transcription	Ovary	ovary
14	chr14:55159600-55169000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr14:55160000-55168800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:55162200-55168800	Weak transcription	Aorta	Aorta
17	chr14:55162400-55167200	Weak transcription	HepG2	liver
18	chr14:55162800-55167800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr14:55163800-55166400	Enhancers	Stomach Smooth Muscle	stomach
20	chr14:55163800-55168800	Enhancers	Fetal Muscle Leg	muscle
21	chr14:55164200-55167400	Enhancers	HSMMtube	muscle
22	chr14:55164400-55167400	Enhancers	Colon Smooth Muscle	Colon
23	chr14:55164600-55167400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr14:55164800-55168800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr14:55164800-55168800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:55165200-55167200	Enhancers	Rectal Smooth Muscle	rectum
27	chr14:55165400-55167200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr14:55165400-55169000	Weak transcription	Right Ventricle	heart
29	chr14:55165600-55166400	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr14:55165600-55166800	Weak transcription	Psoas Muscle	Psoas
31	chr14:55165600-55169000	Weak transcription	Right Atrium	heart
32	chr14:55165600-55178600	Weak transcription	Gastric	stomach
33	chr14:55165800-55166800	Enhancers	HSMM	muscle
34	chr14:55165800-55167000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr14:55165800-55239200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr14:55166000-55166600	Enhancers	Fetal Heart	heart
37	chr14:55166000-55167400	Weak transcription	Liver	Liver
38	chr14:55166000-55168400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr14:55166000-55168800	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr14:55166000-55168800	Weak transcription	NHLF	lung
41	chr14:55166000-55169000	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr14:55166000-55169200	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr14:55166000-55171400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr14:55166000-55171800	Weak transcription	Fetal Intestine Large	intestine
45	chr14:55166000-55181200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr14:55166200-55167200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr14:55166200-55167200	Weak transcription	K562	blood
48	chr14:55166200-55168200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr14:55166200-55168200	Weak transcription	A549	lung
50	chr14:55166200-55168200	Weak transcription	NHEK	skin

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