Variant report

Variant	rs17127752
Chromosome Location	chr14:55149459-55149460
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55031040..55033612-chr14:55148367..55150806,3	MCF-7	breast:
2	chr14:55148272..55150331-chr14:55152656..55154478,2	K562	blood:
3	chr14:55032048..55033777-chr14:55147978..55150274,2	MCF-7	breast:
4	chr14:55144736..55146279-chr14:55149404..55151933,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10873085	1.00[EUR][1000 genomes]
rs17127740	1.00[EUR][1000 genomes]
rs17127743	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs17127755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17127789	1.00[TSI][hapmap]
rs28418605	1.00[EUR][1000 genomes]
rs28532361	1.00[EUR][1000 genomes]
rs57571275	1.00[EUR][1000 genomes]
rs60333237	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv974464	chr14:55092217-55152792	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2755395	chr14:55125925-55149486	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55120000-55179400	Weak transcription	Fetal Intestine Small	intestine
2	chr14:55134800-55151000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:55141200-55151000	Weak transcription	Fetal Lung	lung
4	chr14:55141200-55157400	Weak transcription	HepG2	liver
5	chr14:55141800-55151000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:55142200-55152200	Enhancers	Placenta Amnion	Placenta Amnion
7	chr14:55143400-55151000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:55143600-55151000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:55143800-55151400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr14:55144000-55150200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr14:55144200-55152200	Weak transcription	Brain Angular Gyrus	brain
12	chr14:55144400-55151000	Weak transcription	Ovary	ovary
13	chr14:55144400-55154600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr14:55144400-55157600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:55144600-55150800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr14:55145000-55150000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr14:55145000-55150600	Weak transcription	Adipose Nuclei	Adipose
18	chr14:55145000-55150800	Weak transcription	Brain Anterior Caudate	brain
19	chr14:55145000-55150800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr14:55145000-55150800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr14:55145000-55151000	Weak transcription	Fetal Stomach	stomach
22	chr14:55145000-55151400	Weak transcription	Brain Substantia Nigra	brain
23	chr14:55145200-55151000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr14:55145400-55150200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr14:55145800-55149600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr14:55145800-55150800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr14:55146000-55149600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr14:55146000-55150200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr14:55146000-55150400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr14:55146000-55152800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr14:55146400-55150600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr14:55146400-55150600	Weak transcription	HSMM	muscle
33	chr14:55146400-55155000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr14:55146600-55150800	Weak transcription	HSMMtube	muscle
35	chr14:55146800-55150200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr14:55146800-55151000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr14:55146800-55153600	Enhancers	NHEK	skin
38	chr14:55147000-55153200	Enhancers	HUVEC	blood vessel
39	chr14:55147000-55153600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr14:55147200-55149600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr14:55147400-55151000	Enhancers	Hela-S3	cervix
42	chr14:55147400-55153000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr14:55147400-55153800	Enhancers	HMEC	breast
44	chr14:55147600-55155200	Enhancers	Left Ventricle	heart
45	chr14:55147800-55150400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr14:55147800-55150800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr14:55148000-55151000	Weak transcription	Aorta	Aorta
48	chr14:55148200-55149600	Enhancers	K562	blood
49	chr14:55148400-55155400	Enhancers	NHLF	lung
50	chr14:55148600-55149800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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