Variant report

Variant	rs10874029
Chromosome Location	chr1:79735889-79735890
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10158555	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489649	1.00[ASN][1000 genomes]
rs12024442	1.00[ASN][1000 genomes]
rs12024774	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12024949	1.00[ASN][1000 genomes]
rs12025007	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12025109	1.00[ASN][1000 genomes]
rs12025146	1.00[ASN][1000 genomes]
rs12025643	1.00[ASN][1000 genomes]
rs12026006	0.94[ASN][1000 genomes]
rs12026857	1.00[ASN][1000 genomes]
rs12026909	0.94[ASN][1000 genomes]
rs12026964	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12026969	1.00[ASN][1000 genomes]
rs12027492	0.93[ASN][1000 genomes]
rs12027821	1.00[ASN][1000 genomes]
rs12028115	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12028685	1.00[ASN][1000 genomes]
rs12031186	1.00[ASN][1000 genomes]
rs12032517	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12033889	1.00[ASN][1000 genomes]
rs12034005	1.00[ASN][1000 genomes]
rs12035431	1.00[ASN][1000 genomes]
rs12036705	1.00[ASN][1000 genomes]
rs12039920	1.00[ASN][1000 genomes]
rs12044503	0.94[ASN][1000 genomes]
rs12046684	0.94[ASN][1000 genomes]
rs12046976	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12048398	0.94[ASN][1000 genomes]
rs12049507	0.93[ASN][1000 genomes]
rs12077125	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12088382	1.00[ASN][1000 genomes]
rs1331715	1.00[ASN][1000 genomes]
rs1412140	0.93[ASN][1000 genomes]
rs28370400	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5003964	1.00[ASN][1000 genomes]
rs72941396	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72943004	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72943084	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72943085	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv999471	chr1:79650363-79774433	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv870657	chr1:79701220-79890774	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79735000-79736200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:79735200-79736200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:79735400-79736600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:79735600-79736400	Active TSS	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links