Variant report

Variant	rs72943084
Chromosome Location	chr1:79745171-79745172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:79744482..79747181-chr12:54772744..54775487,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000161642	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10158555	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489649	1.00[ASN][1000 genomes]
rs10874029	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12024442	1.00[ASN][1000 genomes]
rs12024774	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12024949	1.00[ASN][1000 genomes]
rs12025007	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12025109	1.00[ASN][1000 genomes]
rs12025146	1.00[ASN][1000 genomes]
rs12025643	1.00[ASN][1000 genomes]
rs12026006	0.94[ASN][1000 genomes]
rs12026857	1.00[ASN][1000 genomes]
rs12026909	0.94[ASN][1000 genomes]
rs12026964	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12026969	1.00[ASN][1000 genomes]
rs12027492	0.93[ASN][1000 genomes]
rs12027821	1.00[ASN][1000 genomes]
rs12028115	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12028685	1.00[ASN][1000 genomes]
rs12031186	1.00[ASN][1000 genomes]
rs12032517	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12033889	1.00[ASN][1000 genomes]
rs12034005	1.00[ASN][1000 genomes]
rs12035431	1.00[ASN][1000 genomes]
rs12036705	1.00[ASN][1000 genomes]
rs12039920	1.00[ASN][1000 genomes]
rs12044503	0.94[ASN][1000 genomes]
rs12046684	0.94[ASN][1000 genomes]
rs12046976	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12048398	0.94[ASN][1000 genomes]
rs12049507	0.93[ASN][1000 genomes]
rs12077125	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12088382	1.00[ASN][1000 genomes]
rs1331715	1.00[ASN][1000 genomes]
rs1412140	0.93[ASN][1000 genomes]
rs17102985	0.83[AFR][1000 genomes]
rs17102986	0.83[AFR][1000 genomes]
rs17102992	0.97[AFR][1000 genomes]
rs17102993	0.83[AFR][1000 genomes]
rs17103009	0.83[AFR][1000 genomes]
rs17103020	0.81[AFR][1000 genomes]
rs17103022	0.81[AFR][1000 genomes]
rs28370400	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5003964	1.00[ASN][1000 genomes]
rs72941396	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72943004	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72943031	0.81[AFR][1000 genomes]
rs72943040	0.83[AFR][1000 genomes]
rs72943045	0.83[AFR][1000 genomes]
rs72943067	0.85[AFR][1000 genomes]
rs72943081	0.82[AFR][1000 genomes]
rs72943085	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv999471	chr1:79650363-79774433	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv870657	chr1:79701220-79890774	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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