Variant report

Variant	rs10158555
Chromosome Location	chr1:79729175-79729176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:79728080..79730865-chr1:79731789..79734341,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10489649	1.00[ASN][1000 genomes]
rs10874029	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12023913	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap]
rs12024442	1.00[ASN][1000 genomes]
rs12024774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12024949	1.00[ASN][1000 genomes]
rs12025007	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12025109	1.00[ASN][1000 genomes]
rs12025146	1.00[ASN][1000 genomes]
rs12025643	1.00[ASN][1000 genomes]
rs12026006	0.94[ASN][1000 genomes]
rs12026857	1.00[ASN][1000 genomes]
rs12026909	0.94[ASN][1000 genomes]
rs12026964	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12026969	1.00[ASN][1000 genomes]
rs12027492	0.93[ASN][1000 genomes]
rs12027821	1.00[ASN][1000 genomes]
rs12028115	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12028685	1.00[ASN][1000 genomes]
rs12031186	1.00[ASN][1000 genomes]
rs12032517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12033889	1.00[ASN][1000 genomes]
rs12034005	1.00[ASN][1000 genomes]
rs12035431	1.00[ASN][1000 genomes]
rs12036705	1.00[ASN][1000 genomes]
rs12039920	1.00[ASN][1000 genomes]
rs12044503	0.94[ASN][1000 genomes]
rs12046684	0.94[ASN][1000 genomes]
rs12046976	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12048398	0.94[ASN][1000 genomes]
rs12049507	0.93[ASN][1000 genomes]
rs12077125	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12088382	1.00[ASN][1000 genomes]
rs1331715	1.00[ASN][1000 genomes]
rs1412140	0.93[ASN][1000 genomes]
rs28370400	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5003964	1.00[ASN][1000 genomes]
rs72941396	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72943004	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72943084	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72943085	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830326	chr1:79573379-79735667	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv999471	chr1:79650363-79774433	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv870657	chr1:79701220-79890774	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79726000-79730000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:79726600-79729600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:79728000-79729200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr1:79728000-79729400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr1:79728200-79729400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr1:79728600-79729200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr1:79728600-79729200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr1:79728600-79729200	Enhancers	Fetal Brain Male	brain
9	chr1:79728600-79729400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr1:79728800-79729200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr1:79728800-79730000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr1:79729000-79730200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr1:79729000-79730200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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