Variant report

Variant	rs12023913
Chromosome Location	chr1:79784933-79784934
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10158555	0.93[ASN][1000 genomes]
rs10489649	0.93[ASN][1000 genomes]
rs10874029	0.93[ASN][1000 genomes]
rs12024442	0.93[ASN][1000 genomes]
rs12024774	0.93[ASN][1000 genomes]
rs12024949	0.93[ASN][1000 genomes]
rs12025007	0.87[ASN][1000 genomes]
rs12025109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12025146	0.93[ASN][1000 genomes]
rs12025643	0.93[ASN][1000 genomes]
rs12026006	0.87[ASN][1000 genomes]
rs12026857	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12026909	0.87[ASN][1000 genomes]
rs12026964	0.85[ASN][1000 genomes]
rs12026969	0.93[ASN][1000 genomes]
rs12027492	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12027821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12028115	0.87[ASN][1000 genomes]
rs12028685	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12031186	0.93[ASN][1000 genomes]
rs12032517	0.93[ASN][1000 genomes]
rs12033889	0.93[ASN][1000 genomes]
rs12034005	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12035431	0.93[ASN][1000 genomes]
rs12036705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12039488	0.82[EUR][1000 genomes]
rs12039920	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12040033	0.82[EUR][1000 genomes]
rs12044503	0.87[ASN][1000 genomes]
rs12046684	0.87[ASN][1000 genomes]
rs12046976	0.87[ASN][1000 genomes]
rs12048398	0.87[ASN][1000 genomes]
rs12049507	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077125	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12088382	0.93[ASN][1000 genomes]
rs1331715	0.93[ASN][1000 genomes]
rs1412140	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28370400	0.93[ASN][1000 genomes]
rs5003964	0.93[ASN][1000 genomes]
rs72941396	0.87[ASN][1000 genomes]
rs72943084	0.93[ASN][1000 genomes]
rs72943085	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv870657	chr1:79701220-79890774	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv870962	chr1:79755185-79835066	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3323687	chr1:79782414-79785087	Inactive region	TF binding region	1 gene(s)	n/a	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12023913	ADAMDEC1	trans	lymphoblastoid	seeQTL
rs12023913	RAI14	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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