Variant report

Variant	rs17103009
Chromosome Location	chr1:79730032-79730033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:79728080..79730865-chr1:79731789..79734341,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12077125	1.00[CEU][hapmap]
rs1487546	0.90[EUR][1000 genomes]
rs17102873	0.90[EUR][1000 genomes]
rs17102911	0.90[EUR][1000 genomes]
rs17102985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102992	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17103020	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17103022	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41508249	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56753769	0.82[EUR][1000 genomes]
rs61583073	0.86[EUR][1000 genomes]
rs72939495	0.86[EUR][1000 genomes]
rs72939496	0.90[EUR][1000 genomes]
rs72939499	0.90[EUR][1000 genomes]
rs72941308	0.90[EUR][1000 genomes]
rs72941313	0.90[EUR][1000 genomes]
rs72941322	0.90[EUR][1000 genomes]
rs72941329	0.90[EUR][1000 genomes]
rs72941379	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72941393	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72941401	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72941402	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72943030	1.00[EUR][1000 genomes]
rs72943031	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72943040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72943045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72943047	1.00[EUR][1000 genomes]
rs72943048	1.00[EUR][1000 genomes]
rs72943067	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72943081	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72943084	0.83[AFR][1000 genomes]
rs72945028	0.86[EUR][1000 genomes]
rs72945033	0.86[EUR][1000 genomes]
rs7553496	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830326	chr1:79573379-79735667	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv999471	chr1:79650363-79774433	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv870657	chr1:79701220-79890774	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79729000-79730200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr1:79729000-79730200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:79729200-79730400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr1:79729200-79730600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:79729200-79731400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:79729200-79731400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:79729400-79731000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:79729400-79731000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr1:79729400-79731600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:79730000-79730200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:79730000-79731600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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