Variant report
| Variant | rs72943030 |
|---|---|
| Chromosome Location | chr1:79717284-79717285 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs1487546 | 0.90[EUR][1000 genomes] |
| rs17102873 | 0.90[EUR][1000 genomes] |
| rs17102911 | 0.90[EUR][1000 genomes] |
| rs17102985 | 1.00[EUR][1000 genomes] |
| rs17102986 | 1.00[EUR][1000 genomes] |
| rs17102992 | 1.00[EUR][1000 genomes] |
| rs17102993 | 1.00[EUR][1000 genomes] |
| rs17103009 | 1.00[EUR][1000 genomes] |
| rs17103020 | 1.00[EUR][1000 genomes] |
| rs17103022 | 1.00[EUR][1000 genomes] |
| rs41508249 | 1.00[EUR][1000 genomes] |
| rs56753769 | 0.82[EUR][1000 genomes] |
| rs61583073 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72939495 | 0.86[EUR][1000 genomes] |
| rs72939496 | 0.90[EUR][1000 genomes] |
| rs72939499 | 0.90[EUR][1000 genomes] |
| rs72941308 | 0.90[EUR][1000 genomes] |
| rs72941313 | 0.90[EUR][1000 genomes] |
| rs72941322 | 0.90[EUR][1000 genomes] |
| rs72941329 | 0.90[EUR][1000 genomes] |
| rs72941379 | 1.00[EUR][1000 genomes] |
| rs72941393 | 1.00[EUR][1000 genomes] |
| rs72941401 | 1.00[EUR][1000 genomes] |
| rs72941402 | 1.00[EUR][1000 genomes] |
| rs72943031 | 1.00[EUR][1000 genomes] |
| rs72943040 | 1.00[EUR][1000 genomes] |
| rs72943045 | 1.00[EUR][1000 genomes] |
| rs72943047 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72943048 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72943067 | 1.00[EUR][1000 genomes] |
| rs72943081 | 1.00[EUR][1000 genomes] |
| rs72945028 | 0.89[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72945033 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7553496 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491784 | chr1:79146141-79853482 | Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv830326 | chr1:79573379-79735667 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv871182 | chr1:79614989-79822735 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv999471 | chr1:79650363-79774433 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv870657 | chr1:79701220-79890774 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:79717000-79720600 | Weak transcription | Stomach Mucosa | stomach |
