Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1487546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102873	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102911	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102985	0.90[EUR][1000 genomes]
rs17102986	0.90[EUR][1000 genomes]
rs17102992	0.90[EUR][1000 genomes]
rs17102993	0.90[EUR][1000 genomes]
rs17103009	0.90[EUR][1000 genomes]
rs17103020	0.90[EUR][1000 genomes]
rs17103022	0.90[EUR][1000 genomes]
rs41508249	0.90[EUR][1000 genomes]
rs72939495	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72939496	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72941308	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72941313	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72941322	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72941329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72941379	0.90[EUR][1000 genomes]
rs72941393	0.90[EUR][1000 genomes]
rs72941401	0.90[EUR][1000 genomes]
rs72941402	0.90[EUR][1000 genomes]
rs72943030	0.90[EUR][1000 genomes]
rs72943031	0.90[EUR][1000 genomes]
rs72943040	0.90[EUR][1000 genomes]
rs72943045	0.90[EUR][1000 genomes]
rs72943047	0.90[EUR][1000 genomes]
rs72943048	0.90[EUR][1000 genomes]
rs72943067	0.90[EUR][1000 genomes]
rs72943081	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830326	chr1:79573379-79735667	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv999471	chr1:79650363-79774433	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79659400-79664200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:79659400-79664200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:79659400-79664200	Weak transcription	NHDF-Ad	bronchial
4	chr1:79659600-79664400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:79659800-79664200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:79659800-79664200	Weak transcription	Osteobl	bone
7	chr1:79660200-79664200	Weak transcription	HUVEC	blood vessel
8	chr1:79663800-79665000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:79664000-79665200	Enhancers	Hela-S3	cervix
10	chr1:79664000-79665400	Enhancers	Muscle Satellite Cultured Cells	--

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