Variant report

Variant	rs10880169
Chromosome Location	chr12:42223408-42223409
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10785299	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10880151	0.96[CEU][hapmap];0.85[AMR][1000 genomes]
rs10880154	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10880166	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11514058	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12423162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12425223	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12581243	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12811639	0.83[AMR][1000 genomes]
rs1497162	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1497173	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1497189	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1542828	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1546192	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1603537	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2173163	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4569059	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4595606	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4768008	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4768009	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7138101	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7138161	0.83[AMR][1000 genomes]
rs7955116	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7955211	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7960024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7960414	0.81[AMR][1000 genomes]
rs7973978	0.83[AMR][1000 genomes]
rs7974787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs872167	0.89[AMR][1000 genomes]
rs872168	0.89[AMR][1000 genomes]
rs904076	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs904077	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1047870	chr12:42158954-42254373	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
4	nsv1041975	chr12:42159517-42254373	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
5	nsv1037646	chr12:42160758-42254373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
6	nsv1055012	chr12:42221483-42253502	Enhancers ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
7	nsv1051707	chr12:42221483-42254373	Weak transcription Enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42208800-42231000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr12:42218600-42257000	Weak transcription	Aorta	Aorta

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