Variant report

Variant	rs904077
Chromosome Location	chr12:42189291-42189292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10785299	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10880151	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10880154	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10880166	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10880169	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11514058	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12423162	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12425223	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12581243	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12811639	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1390997	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1497154	0.99[ASN][1000 genomes]
rs1497162	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1497173	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1497187	0.90[EUR][1000 genomes]
rs1497189	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1542828	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1546192	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1603537	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2173163	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4569059	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4595606	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4768008	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4768009	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7138101	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7138161	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7955116	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7955211	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7960024	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7960414	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7963394	1.00[ASN][1000 genomes]
rs7973978	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7974787	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs872167	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs872168	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs904076	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832386	chr12:42017259-42189476	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1047870	chr12:42158954-42254373	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
5	nsv1041975	chr12:42159517-42254373	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
6	nsv1037646	chr12:42160758-42254373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
7	nsv1042971	chr12:42170661-42205843	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42187600-42189600	Enhancers	Primary hematopoietic stem cells	blood
2	chr12:42187600-42189800	Enhancers	Fetal Brain Male	brain
3	chr12:42188000-42190400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr12:42188000-42190600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:42188200-42189400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr12:42188200-42190000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr12:42188200-42190200	Enhancers	Fetal Stomach	stomach
8	chr12:42188400-42189400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr12:42188600-42189800	Enhancers	Brain Cingulate Gyrus	brain
10	chr12:42188600-42192600	Enhancers	Brain Germinal Matrix	brain
11	chr12:42188800-42189600	Enhancers	Fetal Muscle Leg	muscle
12	chr12:42189000-42189400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr12:42189000-42189400	Flanking Active TSS	Fetal Brain Female	brain
14	chr12:42189200-42189400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr12:42189200-42189400	Enhancers	Aorta	Aorta
16	chr12:42189200-42189400	Enhancers	NH-A	brain
17	chr12:42189200-42190000	Enhancers	Fetal Lung	lung
18	chr12:42189200-42190200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr12:42189200-42190200	Enhancers	HUVEC	blood vessel
20	chr12:42189200-42196600	Weak transcription	Psoas Muscle	Psoas

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