Variant report

Variant	rs12423162
Chromosome Location	chr10:91208333-91208334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10785299	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10880151	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10880154	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10880166	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10880169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11514058	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12425223	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12581243	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12811639	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1497162	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1497173	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1497189	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1542828	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1546192	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1553034	0.81[EUR][1000 genomes]
rs1603537	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2173163	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2291796	0.81[EUR][1000 genomes]
rs3991116	0.80[EUR][1000 genomes]
rs4569059	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4595606	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4768008	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4768009	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7138101	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7138161	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7955116	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7955211	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7960024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7960414	0.81[AMR][1000 genomes]
rs7973978	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7974787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs872167	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs872168	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs904076	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs904077	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91179600-91225600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:91198800-91223600	Weak transcription	Left Ventricle	heart
3	chr10:91200200-91213600	Weak transcription	Pancreas	Pancrea
4	chr10:91204800-91211000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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