Variant report

Variant	rs7960414
Chromosome Location	chr12:42190552-42190553
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10785299	0.81[AMR][1000 genomes]
rs10880169	0.81[AMR][1000 genomes]
rs12423162	0.81[AMR][1000 genomes]
rs1390997	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1497154	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1546192	0.81[AMR][1000 genomes]
rs4569059	0.81[AMR][1000 genomes]
rs4768008	0.81[AMR][1000 genomes]
rs4768009	0.85[AMR][1000 genomes]
rs7138101	0.81[AMR][1000 genomes]
rs7960024	0.81[AMR][1000 genomes]
rs7963394	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7974787	0.81[AMR][1000 genomes]
rs904076	0.85[AMR][1000 genomes]
rs904077	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1047870	chr12:42158954-42254373	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
4	nsv1041975	chr12:42159517-42254373	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
5	nsv1037646	chr12:42160758-42254373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
6	nsv1042971	chr12:42170661-42205843	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42188000-42190600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:42188600-42192600	Enhancers	Brain Germinal Matrix	brain
3	chr12:42189200-42196600	Weak transcription	Psoas Muscle	Psoas
4	chr12:42190000-42196600	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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