Variant report

Variant	rs10881994
Chromosome Location	chr10:93668408-93668409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93639976..93640647-chr10:93668365..93669151,4	MCF-7	breast:
2	chr10:93667092..93669492-chr10:93682952..93684892,2	MCF-7	breast:
3	chr10:93666065..93670682-chr10:93680624..93684315,6	K562	blood:
4	chr10:93555222..93557965-chr10:93666465..93668632,2	MCF-7	breast:
5	chr10:93668134..93668792-chr22:50357090..50357959,2	HCT-116	colon:
6	chr10:93668102..93670664-chr10:93683184..93685213,2	K562	blood:
7	chr10:93667884..93668537-chr19:10613648..10614526,2	NB4	blood:
8	chr10:93666676..93671284-chr10:93682037..93685018,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000228701	Chromatin interaction
ENSG00000079999	Chromatin interaction
ENSG00000095564	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10748571	0.83[ASN][1000 genomes]
rs10881990	0.93[ASN][1000 genomes]
rs10881991	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10881992	0.92[ASN][1000 genomes]
rs11186733	0.93[ASN][1000 genomes]
rs11186734	0.93[ASN][1000 genomes]
rs11186735	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11186736	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11186737	0.88[ASN][1000 genomes]
rs12220410	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7099658	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842657	chr10:93634155-93668663	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv18192	chr10:93668098-93668730	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv551921	chr10:93668110-93668663	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	nsv551922	chr10:93668140-93668663	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	esv1798947	chr10:93668341-93674933	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93666200-93669600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr10:93666400-93669400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:93666600-93668800	Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr10:93666800-93669400	Active TSS	H9 Cell Line	embryonic stem cell
5	chr10:93667000-93669000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr10:93667000-93669200	Active TSS	Rectal Smooth Muscle	rectum
7	chr10:93667000-93669400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:93667000-93669600	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr10:93667000-93669600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:93667200-93669200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:93667200-93669400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:93667200-93669400	Active TSS	Colon Smooth Muscle	Colon
13	chr10:93667200-93669600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:93667200-93669600	Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr10:93667200-93669600	Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr10:93667200-93669600	Active TSS	NHDF-Ad	bronchial
17	chr10:93667200-93669800	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr10:93667400-93668800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:93667400-93668800	Active TSS	Osteobl	bone
20	chr10:93667400-93669200	Active TSS	NHLF	lung
21	chr10:93667400-93669400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:93667400-93669400	Active TSS	Fetal Intestine Small	intestine
23	chr10:93667400-93669400	Active TSS	Fetal Muscle Trunk	muscle
24	chr10:93667400-93669600	Active TSS	H1 Cell Line	embryonic stem cell
25	chr10:93667400-93669600	Active TSS	Brain Cingulate Gyrus	brain
26	chr10:93667400-93670000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:93667600-93668800	Active TSS	Placenta Amnion	Placenta Amnion
28	chr10:93667600-93668800	Active TSS	Rectal Mucosa Donor 31	rectum
29	chr10:93667600-93668800	Active TSS	GM12878-XiMat	blood
30	chr10:93667600-93669000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:93667600-93669000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr10:93667600-93669000	Active TSS	Fetal Muscle Leg	muscle
33	chr10:93667600-93669200	Active TSS	Brain Anterior Caudate	brain
34	chr10:93667600-93669200	Active TSS	Psoas Muscle	Psoas
35	chr10:93667600-93669400	Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr10:93667600-93669400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:93667600-93669400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
38	chr10:93667600-93669400	Active TSS	Brain Angular Gyrus	brain
39	chr10:93667600-93669400	Active TSS	Brain Substantia Nigra	brain
40	chr10:93667600-93669400	Active TSS	Duodenum Smooth Muscle	Duodenum
41	chr10:93667600-93669400	Active TSS	Right Ventricle	heart
42	chr10:93667600-93669600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
43	chr10:93667600-93669600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:93667600-93669600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:93667600-93669600	Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr10:93667600-93669600	Active TSS	Fetal Kidney	kidney
47	chr10:93667600-93669600	Active TSS	Right Atrium	heart
48	chr10:93667600-93669800	Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr10:93667600-93669800	Active TSS	K562	blood
50	chr10:93667800-93668600	Active TSS	Primary T cells from cord blood	blood

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