Variant report

Variant	rs12220410
Chromosome Location	chr10:93666406-93666407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93666065..93670682-chr10:93680624..93684315,6	K562	blood:
2	chr10:93664900..93666596-chr10:93666902..93668970,2	MCF-7	breast:
3	chr10:93664591..93666451-chr10:93667211..93669714,2	K562	blood:
4	chr10:93662025..93663745-chr10:93663754..93666963,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174721	Chromatin interaction
ENSG00000095564	Chromatin interaction
ENSG00000272817	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10748571	0.83[ASN][1000 genomes]
rs10881990	0.93[ASN][1000 genomes]
rs10881991	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10881992	0.92[ASN][1000 genomes]
rs10881994	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11186733	0.93[ASN][1000 genomes]
rs11186734	0.93[ASN][1000 genomes]
rs11186735	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11186736	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11186737	0.88[ASN][1000 genomes]
rs7099658	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842657	chr10:93634155-93668663	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93647400-93667800	Weak transcription	Spleen	Spleen
2	chr10:93661000-93667000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:93661000-93667000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:93662000-93667000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:93662200-93667000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:93662200-93667200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr10:93662200-93667400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:93662200-93667400	Weak transcription	HSMMtube	muscle
9	chr10:93662200-93667600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr10:93662400-93666800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:93662400-93667000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:93662400-93667000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr10:93662400-93667000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:93662400-93667200	Weak transcription	K562	blood
15	chr10:93662400-93667600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:93662600-93667000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:93662600-93667000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr10:93662600-93667000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr10:93662600-93667000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr10:93662600-93667000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:93662600-93667000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:93662600-93667000	Weak transcription	Fetal Thymus	thymus
23	chr10:93662600-93667000	Weak transcription	NH-A	brain
24	chr10:93662600-93667200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:93662600-93667200	Weak transcription	NHEK	skin
26	chr10:93662600-93667400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:93662800-93667000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:93662800-93667000	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr10:93662800-93667000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr10:93662800-93667000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr10:93662800-93667000	Weak transcription	Placenta	Placenta
32	chr10:93662800-93667000	Weak transcription	A549	lung
33	chr10:93662800-93667000	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr10:93662800-93667200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr10:93662800-93667400	Weak transcription	HMEC	breast
36	chr10:93662800-93667400	Weak transcription	NHLF	lung
37	chr10:93663000-93667000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr10:93663000-93667600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr10:93663600-93667800	Weak transcription	Gastric	stomach
40	chr10:93663800-93667800	Weak transcription	Fetal Intestine Large	intestine
41	chr10:93664000-93667000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr10:93664000-93667000	Weak transcription	Fetal Stomach	stomach
43	chr10:93664200-93667400	Weak transcription	Fetal Muscle Leg	muscle
44	chr10:93664200-93667600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:93664200-93667800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:93664400-93667600	Weak transcription	Psoas Muscle	Psoas
47	chr10:93664600-93667000	Weak transcription	Brain Hippocampus Middle	brain
48	chr10:93664600-93667400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr10:93664600-93667400	Weak transcription	Thymus	Thymus
50	chr10:93664600-93667400	Weak transcription	Osteobl	bone

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