Variant report

Variant	rs10881990
Chromosome Location	chr10:93657436-93657437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10748571	0.86[ASN][1000 genomes]
rs10881982	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs10881991	1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];0.87[JPT][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881992	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10881993	0.81[ASN][1000 genomes]
rs10881994	0.93[ASN][1000 genomes]
rs11186733	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.93[JPT][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186735	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186736	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186737	0.87[CHD][hapmap];0.82[ASN][1000 genomes]
rs12220410	0.93[ASN][1000 genomes]
rs1417256	0.93[JPT][hapmap]
rs1538831	0.93[JPT][hapmap]
rs6583794	0.83[CHD][hapmap];0.86[JPT][hapmap]
rs7083959	0.93[JPT][hapmap]
rs7099658	0.91[CHD][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs7914295	0.81[ASN][1000 genomes]
rs7919192	0.96[CHD][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842657	chr10:93634155-93668663	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93647400-93667800	Weak transcription	Spleen	Spleen
2	chr10:93652200-93658000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:93656400-93658400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:93656800-93661400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:93657200-93657600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:93657200-93657600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:93657200-93657800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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