Variant report

Variant	rs7919192
Chromosome Location	chr10:93660727-93660728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93658422..93663932-chr10:93667095..93670439,6	K562	blood:
2	chr10:93642306..93644379-chr10:93658449..93661429,2	MCF-7	breast:
3	chr10:93639808..93641411-chr10:93659591..93661958,2	MCF-7	breast:
4	chr10:93660215..93662706-chr10:93684355..93686747,2	K562	blood:
5	chr10:93659769..93663294-chr10:93666942..93669408,5	K562	blood:
6	chr10:93660215..93663761-chr10:93664778..93670743,6	MCF-7	breast:
7	chr10:93654392..93656317-chr10:93659125..93661067,2	K562	blood:
8	chr10:93660696..93663256-chr10:93667345..93669258,2	MCF-7	breast:
9	chr10:93657701..93660286-chr10:93660580..93662929,2	K562	blood:
10	chr10:93654817..93656581-chr10:93659125..93660907,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10748571	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10881982	0.84[JPT][hapmap]
rs10881990	0.96[CHD][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs10881991	1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10881992	0.86[ASN][1000 genomes]
rs10881993	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186733	0.81[ASN][1000 genomes]
rs11186734	0.96[CHD][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs11186735	0.83[ASN][1000 genomes]
rs11186736	0.83[ASN][1000 genomes]
rs11186737	0.87[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];0.91[ASN][1000 genomes]
rs1417256	0.92[JPT][hapmap]
rs1538831	0.85[JPT][hapmap]
rs6583794	0.94[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs7083959	0.85[JPT][hapmap]
rs7099658	0.88[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7914295	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842657	chr10:93634155-93668663	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7919192	PDLIM1	cis	cerebellum	SCAN
rs7919192	LIPN	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93647400-93667800	Weak transcription	Spleen	Spleen
2	chr10:93656800-93661400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:93657600-93661800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:93657600-93665600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:93658200-93666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:93658400-93661800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:93659000-93662000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:93659600-93661200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:93660400-93660800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:93660400-93661000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr10:93660400-93662400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:93660400-93662800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr10:93660400-93662800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr10:93660600-93661200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:93660600-93663200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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