Variant report

Variant	rs7914295
Chromosome Location	chr10:93662853-93662854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93658422..93663932-chr10:93667095..93670439,6	K562	blood:
2	chr10:93661453..93663072-chrX:48379184..48381618,2	MCF-7	breast:
3	chr10:93662025..93663745-chr10:93663754..93666963,3	MCF-7	breast:
4	chr10:93659769..93663294-chr10:93666942..93669408,5	K562	blood:
5	chr10:93660215..93663761-chr10:93664778..93670743,6	MCF-7	breast:
6	chr10:93660696..93663256-chr10:93667345..93669258,2	MCF-7	breast:
7	chr10:93657701..93660286-chr10:93660580..93662929,2	K562	blood:

Variant related genes	Relation type
ENSG00000174721	Chromatin interaction
ENSG00000272817	Chromatin interaction
ENSG00000147155	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10748571	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881990	0.81[ASN][1000 genomes]
rs10881991	0.83[ASN][1000 genomes]
rs10881993	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186733	0.81[ASN][1000 genomes]
rs11186734	0.81[ASN][1000 genomes]
rs11186735	0.83[ASN][1000 genomes]
rs11186736	0.83[ASN][1000 genomes]
rs11186737	0.91[ASN][1000 genomes]
rs7099658	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7919192	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842657	chr10:93634155-93668663	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93647400-93667800	Weak transcription	Spleen	Spleen
2	chr10:93657600-93665600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:93658200-93666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:93660600-93663200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:93661000-93665600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:93661000-93667000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:93661000-93667000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:93661200-93663000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:93661800-93665600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:93661800-93665800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:93662000-93667000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:93662200-93667000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr10:93662200-93667200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr10:93662200-93667400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:93662200-93667400	Weak transcription	HSMMtube	muscle
16	chr10:93662200-93667600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr10:93662400-93665600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:93662400-93666400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:93662400-93666800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr10:93662400-93667000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:93662400-93667000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr10:93662400-93667000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:93662400-93667200	Weak transcription	K562	blood
24	chr10:93662400-93667600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:93662600-93664200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:93662600-93664200	Weak transcription	Osteobl	bone
27	chr10:93662600-93664400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr10:93662600-93664600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr10:93662600-93664800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr10:93662600-93665600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr10:93662600-93665800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr10:93662600-93665800	Weak transcription	HepG2	liver
33	chr10:93662600-93666400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr10:93662600-93666400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:93662600-93667000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr10:93662600-93667000	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr10:93662600-93667000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr10:93662600-93667000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr10:93662600-93667000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:93662600-93667000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr10:93662600-93667000	Weak transcription	Fetal Thymus	thymus
42	chr10:93662600-93667000	Weak transcription	NH-A	brain
43	chr10:93662600-93667200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:93662600-93667200	Weak transcription	NHEK	skin
45	chr10:93662600-93667400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:93662800-93664000	Weak transcription	HUVEC	blood vessel
47	chr10:93662800-93664400	Weak transcription	Hela-S3	cervix
48	chr10:93662800-93664600	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr10:93662800-93664600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr10:93662800-93665600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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