Variant report

Variant	rs11186736
Chromosome Location	chr10:93660908-93660909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93658422..93663932-chr10:93667095..93670439,6	K562	blood:
2	chr10:93642306..93644379-chr10:93658449..93661429,2	MCF-7	breast:
3	chr10:93639808..93641411-chr10:93659591..93661958,2	MCF-7	breast:
4	chr10:93660215..93662706-chr10:93684355..93686747,2	K562	blood:
5	chr10:93659769..93663294-chr10:93666942..93669408,5	K562	blood:
6	chr10:93660215..93663761-chr10:93664778..93670743,6	MCF-7	breast:
7	chr10:93654392..93656317-chr10:93659125..93661067,2	K562	blood:
8	chr10:93660696..93663256-chr10:93667345..93669258,2	MCF-7	breast:
9	chr10:93657701..93660286-chr10:93660580..93662929,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000174721	Chromatin interaction
ENSG00000272817	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10748571	0.88[ASN][1000 genomes]
rs10881990	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10881992	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10881993	0.83[ASN][1000 genomes]
rs10881994	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11186733	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186734	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186735	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186737	0.84[ASN][1000 genomes]
rs12220410	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7099658	0.85[ASN][1000 genomes]
rs7914295	0.83[ASN][1000 genomes]
rs7919192	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842657	chr10:93634155-93668663	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93647400-93667800	Weak transcription	Spleen	Spleen
2	chr10:93656800-93661400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:93657600-93661800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:93657600-93665600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:93658200-93666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:93658400-93661800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:93659000-93662000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:93659600-93661200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:93660400-93661000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr10:93660400-93662400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:93660400-93662800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr10:93660400-93662800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr10:93660600-93661200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:93660600-93663200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:93660800-93661000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr10:93660800-93661000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:93660800-93661000	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr10:93660800-93661000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:93660800-93661200	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr10:93660800-93662600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr10:93660800-93662800	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr10:93660800-93662800	Enhancers	Hela-S3	cervix
23	chr10:93660800-93662800	Enhancers	HUVEC	blood vessel
24	chr10:93660800-93662800	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links