Variant report

Variant	rs10882327
Chromosome Location	chr10:95512155-95512156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95499932..95502310-chr10:95511778..95514024,2	MCF-7	breast:
2	chr10:95510815..95514212-chr10:95521474..95524274,4	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2095889	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095890	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758534	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7069934	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7069940	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099740	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7894449	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7913442	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3346948	chr10:95421957-95532625	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10882327	C10orf4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95505800-95517600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:95508200-95512800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr10:95508200-95515000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:95508400-95512200	Enhancers	Fetal Intestine Large	intestine
5	chr10:95508400-95512200	Enhancers	Fetal Intestine Small	intestine
6	chr10:95509200-95514600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:95509600-95512800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:95509600-95514800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:95509800-95512200	Weak transcription	NHLF	lung
10	chr10:95509800-95514000	Weak transcription	Small Intestine	intestine
11	chr10:95510200-95517600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:95510400-95512600	Enhancers	Placenta	Placenta
13	chr10:95510800-95513200	Enhancers	Hela-S3	cervix
14	chr10:95510800-95514400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:95511000-95512200	Enhancers	Placenta Amnion	Placenta Amnion
16	chr10:95511000-95512800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:95511000-95516800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr10:95511000-95517600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:95511200-95512400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr10:95511200-95512600	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr10:95511200-95512800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:95511600-95512200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
23	chr10:95511600-95512200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr10:95511600-95512200	Enhancers	Liver	Liver
25	chr10:95511600-95512200	Flanking Active TSS	Brain Anterior Caudate	brain
26	chr10:95511600-95512200	Active TSS	Monocytes-CD14+_RO01746	blood
27	chr10:95511600-95512600	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr10:95511600-95513800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:95511600-95517600	Enhancers	Fetal Stomach	stomach
30	chr10:95511800-95512200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
31	chr10:95511800-95512200	Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr10:95511800-95512200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr10:95511800-95512200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:95511800-95512200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
35	chr10:95511800-95512200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr10:95511800-95512200	Flanking Active TSS	Colon Smooth Muscle	Colon
37	chr10:95511800-95512200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr10:95511800-95512200	Active TSS	Fetal Heart	heart
39	chr10:95511800-95512200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr10:95511800-95512200	Flanking Active TSS	A549	lung
41	chr10:95511800-95512600	Enhancers	Esophagus	oesophagus
42	chr10:95511800-95512600	Enhancers	Fetal Brain Female	brain
43	chr10:95511800-95512600	Enhancers	Fetal Muscle Trunk	muscle
44	chr10:95511800-95512600	Enhancers	Gastric	stomach
45	chr10:95511800-95512600	Enhancers	Right Atrium	heart
46	chr10:95511800-95512600	Enhancers	NHDF-Ad	bronchial
47	chr10:95511800-95512800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:95511800-95512800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr10:95511800-95513000	Enhancers	NH-A	brain
50	chr10:95511800-95513000	Enhancers	Osteobl	bone

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