Variant report

Variant	rs2095889
Chromosome Location	chr10:95511000-95511001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95507841..95511578-chr10:95514882..95519880,7	MCF-7	breast:
2	chr10:95510815..95514212-chr10:95521474..95524274,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108231	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10882327	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095890	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095891	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758534	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7069934	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7069940	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099740	0.81[EUR][1000 genomes]
rs7894449	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7913442	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3346948	chr10:95421957-95532625	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2095889	C10orf4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95503000-95511600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:95505400-95511600	Weak transcription	Liver	Liver
3	chr10:95505800-95517600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:95506600-95511800	Weak transcription	Stomach Mucosa	stomach
5	chr10:95506800-95511800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:95507000-95511000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:95507000-95511000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:95507000-95511600	Weak transcription	Brain Substantia Nigra	brain
9	chr10:95507000-95511600	Weak transcription	A549	lung
10	chr10:95507200-95511800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:95507600-95511800	Weak transcription	HSMMtube	muscle
12	chr10:95507800-95511800	Weak transcription	NH-A	brain
13	chr10:95508200-95512800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr10:95508200-95515000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:95508400-95511800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr10:95508400-95512200	Enhancers	Fetal Intestine Large	intestine
17	chr10:95508400-95512200	Enhancers	Fetal Intestine Small	intestine
18	chr10:95509200-95511800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:95509200-95514600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:95509400-95511000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr10:95509400-95511200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:95509400-95511200	Weak transcription	Brain Anterior Caudate	brain
23	chr10:95509400-95511200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:95509400-95511200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:95509400-95511400	Weak transcription	Brain Angular Gyrus	brain
26	chr10:95509400-95511600	Weak transcription	Adipose Nuclei	Adipose
27	chr10:95509400-95511800	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr10:95509400-95511800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:95509400-95511800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr10:95509400-95511800	Weak transcription	Right Atrium	heart
31	chr10:95509400-95512000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr10:95509600-95511000	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr10:95509600-95511000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr10:95509600-95511600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:95509600-95511600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr10:95509600-95511600	Weak transcription	Fetal Stomach	stomach
37	chr10:95509600-95511600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr10:95509600-95511800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr10:95509600-95511800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:95509600-95511800	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr10:95509600-95511800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:95509600-95511800	Weak transcription	NHDF-Ad	bronchial
43	chr10:95509600-95511800	Weak transcription	Osteobl	bone
44	chr10:95509600-95512800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:95509600-95514800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr10:95509800-95511000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:95509800-95511000	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr10:95509800-95511000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr10:95509800-95511400	Weak transcription	Colon Smooth Muscle	Colon
50	chr10:95509800-95511600	Weak transcription	Duodenum Mucosa	Duodenum

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