Variant report

Variant	rs2095891
Chromosome Location	chr10:95511350-95511351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95507841..95511578-chr10:95514882..95519880,7	MCF-7	breast:
2	chr10:95510815..95514212-chr10:95521474..95524274,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108231	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10882326	0.89[MKK][hapmap]
rs10882327	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095889	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2095890	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758534	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7069934	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7069940	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099740	0.83[EUR][1000 genomes]
rs7894449	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7913442	0.94[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3346948	chr10:95421957-95532625	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs2095891	FRA10AC1	cis	cerebellum	SCAN
rs2095891	C10orf4	Cis_1M	lymphoblastoid	RTeQTL
rs2095891	NUDT9P1	cis	parietal	SCAN
rs2095891	CEP55	cis	parietal	SCAN
rs2095891	SORBS1	cis	cerebellum	SCAN
rs2095891	FRA10AC1	cis	parietal	SCAN

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95503000-95511600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:95505400-95511600	Weak transcription	Liver	Liver
3	chr10:95505800-95517600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:95506600-95511800	Weak transcription	Stomach Mucosa	stomach
5	chr10:95506800-95511800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:95507000-95511600	Weak transcription	Brain Substantia Nigra	brain
7	chr10:95507000-95511600	Weak transcription	A549	lung
8	chr10:95507200-95511800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:95507600-95511800	Weak transcription	HSMMtube	muscle
10	chr10:95507800-95511800	Weak transcription	NH-A	brain
11	chr10:95508200-95512800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr10:95508200-95515000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:95508400-95511800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr10:95508400-95512200	Enhancers	Fetal Intestine Large	intestine
15	chr10:95508400-95512200	Enhancers	Fetal Intestine Small	intestine
16	chr10:95509200-95511800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:95509200-95514600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:95509400-95511400	Weak transcription	Brain Angular Gyrus	brain
19	chr10:95509400-95511600	Weak transcription	Adipose Nuclei	Adipose
20	chr10:95509400-95511800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr10:95509400-95511800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:95509400-95511800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:95509400-95511800	Weak transcription	Right Atrium	heart
24	chr10:95509400-95512000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:95509600-95511600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:95509600-95511600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr10:95509600-95511600	Weak transcription	Fetal Stomach	stomach
28	chr10:95509600-95511600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr10:95509600-95511800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:95509600-95511800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:95509600-95511800	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr10:95509600-95511800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr10:95509600-95511800	Weak transcription	NHDF-Ad	bronchial
34	chr10:95509600-95511800	Weak transcription	Osteobl	bone
35	chr10:95509600-95512800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:95509600-95514800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:95509800-95511400	Weak transcription	Colon Smooth Muscle	Colon
38	chr10:95509800-95511600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr10:95509800-95512200	Weak transcription	NHLF	lung
40	chr10:95509800-95514000	Weak transcription	Small Intestine	intestine
41	chr10:95510200-95512000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr10:95510200-95517600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr10:95510400-95512000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr10:95510400-95512600	Enhancers	Placenta	Placenta
45	chr10:95510600-95511600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr10:95510600-95512000	Enhancers	H9 Cell Line	embryonic stem cell
47	chr10:95510800-95511800	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr10:95510800-95513200	Enhancers	Hela-S3	cervix
49	chr10:95510800-95514400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr10:95511000-95511600	Enhancers	Fetal Muscle Leg	muscle

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