Variant report

Variant	rs10882587
Chromosome Location	chr10:97140624-97140625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97071593..97074402-chr10:97139756..97142626,2	K562	blood:
2	chr10:97132552..97135428-chr10:97138825..97140686,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11188311	0.81[CEU][hapmap];0.88[CHB][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1410058	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1536556	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2025852	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2078276	0.87[CHB][hapmap]
rs55688714	0.81[EUR][1000 genomes]
rs6583992	0.87[CHB][hapmap]
rs7084752	0.81[CHB][hapmap]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:97116400-97142400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:97116800-97141400	Weak transcription	Fetal Lung	lung
5	chr10:97120400-97141400	Weak transcription	Gastric	stomach
6	chr10:97121000-97148000	Weak transcription	Esophagus	oesophagus
7	chr10:97122000-97149400	Weak transcription	Spleen	Spleen
8	chr10:97130200-97141600	Weak transcription	Fetal Intestine Small	intestine
9	chr10:97130200-97156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:97133000-97142400	Genic enhancers	Adipose Nuclei	Adipose
11	chr10:97135600-97155600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:97135800-97141600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:97135800-97145000	Strong transcription	Fetal Brain Female	brain
14	chr10:97136000-97141200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:97136200-97145400	Strong transcription	Placenta	Placenta
16	chr10:97137200-97140800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:97137200-97147400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:97137200-97148000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr10:97137600-97145000	Strong transcription	Fetal Muscle Leg	muscle
20	chr10:97137800-97142200	Strong transcription	HSMMtube	muscle
21	chr10:97137800-97144000	Strong transcription	Psoas Muscle	Psoas
22	chr10:97137800-97144200	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:97137800-97146200	Weak transcription	Small Intestine	intestine
24	chr10:97137800-97147400	Strong transcription	HepG2	liver
25	chr10:97137800-97156000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:97138000-97145000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr10:97138200-97143600	Weak transcription	GM12878-XiMat	blood
28	chr10:97138200-97147200	Strong transcription	Skeletal Muscle Male	skeletal muscle
29	chr10:97138400-97141400	Weak transcription	Brain Substantia Nigra	brain
30	chr10:97138400-97141400	Weak transcription	Ovary	ovary
31	chr10:97138400-97143600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:97138400-97145000	Weak transcription	Stomach Mucosa	stomach
33	chr10:97138400-97145800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr10:97138400-97147000	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr10:97138400-97147400	Weak transcription	Right Atrium	heart
36	chr10:97138600-97144600	Strong transcription	Fetal Stomach	stomach
37	chr10:97138600-97145400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:97138800-97141800	Weak transcription	Right Ventricle	heart
39	chr10:97139000-97143200	Strong transcription	Brain Inferior Temporal Lobe	brain
40	chr10:97139200-97143000	Strong transcription	Brain Germinal Matrix	brain
41	chr10:97139200-97144000	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr10:97139200-97144400	Strong transcription	Fetal Intestine Large	intestine
43	chr10:97139200-97145600	Strong transcription	Liver	Liver
44	chr10:97139400-97141000	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr10:97139400-97142200	Strong transcription	Fetal Muscle Trunk	muscle
46	chr10:97139400-97142200	Strong transcription	Lung	lung
47	chr10:97139400-97143600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr10:97139400-97145000	Strong transcription	Brain Cingulate Gyrus	brain
49	chr10:97139400-97145400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:97139600-97140800	Strong transcription	Duodenum Mucosa	Duodenum

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