Variant report

Variant	rs11188311
Chromosome Location	chr10:97154698-97154699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97132603..97134648-chr10:97154375..97156702,2	K562	blood:
2	chr10:97151073..97155956-chr10:97162503..97165670,4	K562	blood:
3	chr10:97131433..97134103-chr10:97153570..97155875,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10882587	0.81[CEU][hapmap];0.88[CHB][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1410058	0.83[AFR][1000 genomes]
rs1536556	0.83[ASW][hapmap];0.88[CHB][hapmap]
rs2025852	0.91[CEU][hapmap];0.87[CHB][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55688714	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583992	0.84[CEU][hapmap]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97130200-97156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:97135600-97155600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:97137800-97156000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:97140600-97158600	Weak transcription	HSMM	muscle
5	chr10:97142600-97155600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:97144000-97155400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:97144400-97155600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr10:97146800-97168400	Weak transcription	Small Intestine	intestine
9	chr10:97147200-97158800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
10	chr10:97148600-97156600	Weak transcription	Esophagus	oesophagus
11	chr10:97149200-97155600	Weak transcription	Brain Germinal Matrix	brain
12	chr10:97149200-97155800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr10:97149600-97156600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr10:97149800-97156600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:97150000-97155600	Weak transcription	Spleen	Spleen
16	chr10:97150200-97155600	Weak transcription	Brain Angular Gyrus	brain
17	chr10:97150200-97163600	Weak transcription	Stomach Mucosa	stomach
18	chr10:97150800-97155200	Weak transcription	HepG2	liver
19	chr10:97151000-97166200	Strong transcription	Liver	Liver
20	chr10:97151200-97157400	Weak transcription	Fetal Kidney	kidney
21	chr10:97151800-97168800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:97152000-97164200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:97152200-97155400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:97152200-97156400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:97152200-97156800	Genic enhancers	Adipose Nuclei	Adipose
26	chr10:97152200-97159000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
27	chr10:97152400-97160200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:97152600-97155200	Weak transcription	Fetal Brain Female	brain
29	chr10:97152600-97155400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:97152600-97155400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr10:97152600-97155400	Weak transcription	Colonic Mucosa	Colon
32	chr10:97152600-97155600	Weak transcription	Fetal Lung	lung
33	chr10:97152600-97157600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr10:97152800-97155200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr10:97152800-97155200	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:97152800-97155200	Weak transcription	Fetal Intestine Large	intestine
37	chr10:97152800-97155400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr10:97152800-97155600	Weak transcription	Lung	lung
39	chr10:97152800-97156600	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr10:97153000-97155600	Weak transcription	Placenta	Placenta
41	chr10:97153000-97156400	Weak transcription	Brain Substantia Nigra	brain
42	chr10:97153200-97155400	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:97153200-97162000	Strong transcription	Fetal Muscle Leg	muscle
44	chr10:97153400-97155000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr10:97153400-97155600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr10:97153400-97159600	Weak transcription	Fetal Brain Male	brain
47	chr10:97153600-97155200	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr10:97153600-97155200	Weak transcription	Fetal Heart	heart
49	chr10:97153600-97155400	Weak transcription	Brain Anterior Caudate	brain
50	chr10:97153600-97155400	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links