Variant report

Variant	rs1536556
Chromosome Location	chr10:97137105-97137106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97135358..97137320-chr10:97452090..97454047,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119977	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10882587	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11188306	0.84[AFR][1000 genomes]
rs11188311	0.83[ASW][hapmap];0.88[CHB][hapmap]
rs1410058	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2025852	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2078276	0.87[CHB][hapmap]
rs2274490	0.82[ASW][hapmap];0.95[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs4918921	0.82[ASW][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs6583992	0.86[CHB][hapmap]
rs7084752	0.81[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1536556	AVPI1	cis	parietal	SCAN

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:97116000-97138200	Weak transcription	Ovary	ovary
5	chr10:97116400-97139600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:97116400-97142400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:97116600-97139400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr10:97116800-97137600	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:97116800-97141400	Weak transcription	Fetal Lung	lung
10	chr10:97117400-97139200	Weak transcription	Brain Germinal Matrix	brain
11	chr10:97117600-97138000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:97118000-97137800	Weak transcription	Pancreas	Pancrea
13	chr10:97120400-97141400	Weak transcription	Gastric	stomach
14	chr10:97121000-97148000	Weak transcription	Esophagus	oesophagus
15	chr10:97122000-97149400	Weak transcription	Spleen	Spleen
16	chr10:97124800-97137200	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:97126200-97139400	Weak transcription	Lung	lung
18	chr10:97126800-97137800	Weak transcription	HepG2	liver
19	chr10:97129400-97137800	Weak transcription	Right Atrium	heart
20	chr10:97130000-97138000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr10:97130200-97141600	Weak transcription	Fetal Intestine Small	intestine
22	chr10:97130200-97156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:97130800-97137800	Weak transcription	Fetal Stomach	stomach
24	chr10:97131200-97140200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr10:97131200-97140200	Weak transcription	HSMM	muscle
26	chr10:97131400-97137800	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr10:97131600-97139800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr10:97131800-97140200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr10:97132000-97137800	Weak transcription	HSMMtube	muscle
30	chr10:97132000-97139200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr10:97132000-97139200	Weak transcription	Fetal Intestine Large	intestine
32	chr10:97132600-97137800	Weak transcription	Psoas Muscle	Psoas
33	chr10:97133000-97142400	Genic enhancers	Adipose Nuclei	Adipose
34	chr10:97134000-97137400	Genic enhancers	Duodenum Smooth Muscle	Duodenum
35	chr10:97134600-97137200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:97134800-97137400	Genic enhancers	Fetal Heart	heart
37	chr10:97135200-97138600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:97135400-97138200	Genic enhancers	Liver	Liver
39	chr10:97135600-97139000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr10:97135600-97139400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr10:97135600-97139800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr10:97135600-97155600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr10:97135800-97137200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr10:97135800-97138000	Enhancers	Stomach Smooth Muscle	stomach
45	chr10:97135800-97141600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:97135800-97145000	Strong transcription	Fetal Brain Female	brain
47	chr10:97136000-97137800	Weak transcription	Brain Anterior Caudate	brain
48	chr10:97136000-97137800	Weak transcription	Brain Substantia Nigra	brain
49	chr10:97136000-97141200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:97136200-97137200	Weak transcription	Aorta	Aorta

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