Variant report

Variant	rs2025852
Chromosome Location	chr10:97142245-97142246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97071593..97074402-chr10:97139756..97142626,2	K562	blood:
2	chr10:97140678..97143224-chr10:97145015..97146938,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10882587	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11188311	0.91[CEU][hapmap];0.87[CHB][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1410058	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1536556	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2078276	0.87[CHB][hapmap]
rs55688714	0.81[EUR][1000 genomes]
rs6583992	0.84[CEU][hapmap];0.87[CHB][hapmap]
rs7084752	0.81[CHB][hapmap]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:97116400-97142400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:97121000-97148000	Weak transcription	Esophagus	oesophagus
5	chr10:97122000-97149400	Weak transcription	Spleen	Spleen
6	chr10:97130200-97156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:97133000-97142400	Genic enhancers	Adipose Nuclei	Adipose
8	chr10:97135600-97155600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:97135800-97145000	Strong transcription	Fetal Brain Female	brain
10	chr10:97136200-97145400	Strong transcription	Placenta	Placenta
11	chr10:97137200-97147400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:97137200-97148000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr10:97137600-97145000	Strong transcription	Fetal Muscle Leg	muscle
14	chr10:97137800-97144000	Strong transcription	Psoas Muscle	Psoas
15	chr10:97137800-97144200	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr10:97137800-97146200	Weak transcription	Small Intestine	intestine
17	chr10:97137800-97147400	Strong transcription	HepG2	liver
18	chr10:97137800-97156000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:97138000-97145000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr10:97138200-97143600	Weak transcription	GM12878-XiMat	blood
21	chr10:97138200-97147200	Strong transcription	Skeletal Muscle Male	skeletal muscle
22	chr10:97138400-97143600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:97138400-97145000	Weak transcription	Stomach Mucosa	stomach
24	chr10:97138400-97145800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr10:97138400-97147000	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr10:97138400-97147400	Weak transcription	Right Atrium	heart
27	chr10:97138600-97144600	Strong transcription	Fetal Stomach	stomach
28	chr10:97138600-97145400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:97139000-97143200	Strong transcription	Brain Inferior Temporal Lobe	brain
30	chr10:97139200-97143000	Strong transcription	Brain Germinal Matrix	brain
31	chr10:97139200-97144000	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr10:97139200-97144400	Strong transcription	Fetal Intestine Large	intestine
33	chr10:97139200-97145600	Strong transcription	Liver	Liver
34	chr10:97139400-97143600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr10:97139400-97145000	Strong transcription	Brain Cingulate Gyrus	brain
36	chr10:97139400-97145400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr10:97139600-97142400	Strong transcription	Brain Hippocampus Middle	brain
38	chr10:97139600-97142600	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr10:97139600-97144000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr10:97139600-97145000	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr10:97139800-97143000	Strong transcription	Left Ventricle	heart
42	chr10:97139800-97144000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr10:97139800-97144400	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr10:97140000-97148200	Weak transcription	Fetal Heart	heart
45	chr10:97140200-97142400	Strong transcription	H9 Cell Line	embryonic stem cell
46	chr10:97140400-97143800	Strong transcription	Colon Smooth Muscle	Colon
47	chr10:97140600-97144200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr10:97140600-97158600	Weak transcription	HSMM	muscle
49	chr10:97140800-97147000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr10:97140800-97147200	Weak transcription	Brain Angular Gyrus	brain

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