Variant report

Variant	rs10882797
Chromosome Location	chr10:98236531-98236532
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10882798	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10882800	0.94[EUR][1000 genomes]
rs11188776	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs11188786	0.94[EUR][1000 genomes]
rs11188787	0.89[ASN][1000 genomes]
rs11188791	0.95[EUR][1000 genomes]
rs11188793	0.95[EUR][1000 genomes]
rs11188794	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs12218172	0.89[ASN][1000 genomes]
rs12257958	0.94[EUR][1000 genomes]
rs17111881	0.86[EUR][1000 genomes]
rs4623825	0.86[EUR][1000 genomes]
rs56219083	0.88[EUR][1000 genomes]
rs7099756	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes]
rs9325483	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98229400-98239400	Weak transcription	Right Ventricle	heart
2	chr10:98230400-98247800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:98235800-98237400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:98236400-98236600	Enhancers	Fetal Heart	heart
5	chr10:98236400-98236800	Bivalent Enhancer	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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