Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10509709	1.00[ASN][1000 genomes]
rs10882797	0.94[EUR][1000 genomes]
rs10882798	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188791	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11188793	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11188798	1.00[ASN][1000 genomes]
rs11188804	1.00[ASN][1000 genomes]
rs11188805	1.00[ASN][1000 genomes]
rs12244790	1.00[ASN][1000 genomes]
rs12257958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324254	1.00[ASN][1000 genomes]
rs17111881	0.92[EUR][1000 genomes]
rs4623825	0.92[EUR][1000 genomes]
rs55676033	1.00[ASN][1000 genomes]
rs56219083	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56236090	1.00[ASN][1000 genomes]
rs7070979	1.00[ASN][1000 genomes]
rs7083102	1.00[ASN][1000 genomes]
rs7099756	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs730596	1.00[ASN][1000 genomes]
rs74151303	1.00[ASN][1000 genomes]
rs74153659	1.00[ASN][1000 genomes]
rs9325483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98230400-98247800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:98240200-98247800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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