Variant report

Variant	rs730596
Chromosome Location	chr10:98172014-98172015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10509709	1.00[ASN][1000 genomes]
rs10882798	1.00[ASN][1000 genomes]
rs10882800	1.00[ASN][1000 genomes]
rs11188786	1.00[ASN][1000 genomes]
rs11188798	1.00[ASN][1000 genomes]
rs11188804	1.00[ASN][1000 genomes]
rs11188805	1.00[ASN][1000 genomes]
rs12244790	1.00[ASN][1000 genomes]
rs12257958	1.00[ASN][1000 genomes]
rs1324254	1.00[ASN][1000 genomes]
rs55676033	1.00[ASN][1000 genomes]
rs56219083	1.00[ASN][1000 genomes]
rs56236090	1.00[ASN][1000 genomes]
rs7070979	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7083102	1.00[ASN][1000 genomes]
rs7099756	1.00[ASN][1000 genomes]
rs74151303	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74153659	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9325483	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1047657	chr10:98123234-98183487	Weak transcription Active TSS Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs730596	HYI	trans	brain	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98159800-98172800	Weak transcription	Left Ventricle	heart
2	chr10:98167800-98172200	Weak transcription	Fetal Heart	heart
3	chr10:98170600-98172800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:98171400-98172600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
5	chr10:98171400-98172800	Bivalent Enhancer	HSMMtube	muscle
6	chr10:98171400-98174600	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr10:98171600-98174400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr10:98171600-98182200	Weak transcription	Spleen	Spleen
9	chr10:98172000-98173600	Enhancers	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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