Variant report

Variant	rs56219083
Chromosome Location	chr10:98218580-98218581
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10509709	1.00[ASN][1000 genomes]
rs10882797	0.88[EUR][1000 genomes]
rs10882798	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882800	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188786	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188791	0.93[EUR][1000 genomes]
rs11188793	0.93[EUR][1000 genomes]
rs11188798	1.00[ASN][1000 genomes]
rs11188804	1.00[ASN][1000 genomes]
rs11188805	1.00[ASN][1000 genomes]
rs12244790	1.00[ASN][1000 genomes]
rs12257958	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324254	1.00[ASN][1000 genomes]
rs17111881	0.98[EUR][1000 genomes]
rs4623825	0.98[EUR][1000 genomes]
rs55676033	1.00[ASN][1000 genomes]
rs56236090	1.00[ASN][1000 genomes]
rs7070979	1.00[ASN][1000 genomes]
rs7083102	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099756	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs730596	1.00[ASN][1000 genomes]
rs74151303	1.00[ASN][1000 genomes]
rs74153659	1.00[ASN][1000 genomes]
rs9325483	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98214400-98219000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:98214400-98219800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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