Variant report

Variant	rs4623825
Chromosome Location	chr10:98213620-98213621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10882797	0.86[EUR][1000 genomes]
rs10882798	0.90[EUR][1000 genomes]
rs10882800	0.92[EUR][1000 genomes]
rs11188786	0.92[EUR][1000 genomes]
rs11188791	0.90[EUR][1000 genomes]
rs11188793	0.90[EUR][1000 genomes]
rs12257958	0.92[EUR][1000 genomes]
rs17111881	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56219083	0.98[EUR][1000 genomes]
rs7083102	0.84[EUR][1000 genomes]
rs7099756	0.90[EUR][1000 genomes]
rs9325483	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98210600-98214800	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr10:98212200-98214200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:98212400-98214000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:98212600-98213800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:98212600-98214000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:98212600-98216600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:98212800-98213800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:98212800-98214000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr10:98212800-98214200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr10:98213000-98213800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr10:98213000-98214000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:98213400-98214400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr10:98213600-98214200	Bivalent Enhancer	Fetal Brain Male	brain
14	chr10:98213600-98214400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr10:98213600-98214800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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