Variant report

Variant	rs12244790
Chromosome Location	chr10:98260726-98260727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10509709	1.00[ASN][1000 genomes]
rs10882798	1.00[ASN][1000 genomes]
rs10882800	1.00[ASN][1000 genomes]
rs11188786	1.00[ASN][1000 genomes]
rs11188798	1.00[ASN][1000 genomes]
rs11188804	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188805	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257958	1.00[ASN][1000 genomes]
rs1324254	1.00[ASN][1000 genomes]
rs55676033	1.00[ASN][1000 genomes]
rs56219083	1.00[ASN][1000 genomes]
rs56236090	1.00[ASN][1000 genomes]
rs7070979	1.00[ASN][1000 genomes]
rs7083102	1.00[ASN][1000 genomes]
rs7099756	1.00[ASN][1000 genomes]
rs730596	1.00[ASN][1000 genomes]
rs74151303	1.00[ASN][1000 genomes]
rs74153659	1.00[ASN][1000 genomes]
rs9325483	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98251600-98261600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:98254400-98266400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:98257400-98261400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:98260200-98261000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr10:98260200-98261600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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