Variant report

Variant	rs10892647
Chromosome Location	chr11:120804291-120804292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10892648	0.86[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs10892651	0.85[ASN][1000 genomes]
rs11218066	0.85[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs11218068	0.90[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs11218069	0.90[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs11218070	0.86[ASW][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs11218071	0.86[ASW][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs11218072	0.86[ASW][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs11218074	0.86[ASN][1000 genomes]
rs11218075	0.86[ASN][1000 genomes]
rs12361041	0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs12419730	0.90[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs17124570	0.91[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17124575	0.81[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2186621	0.85[ASN][1000 genomes]
rs35024210	0.85[ASN][1000 genomes]
rs3781816	0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs3781817	0.90[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs4935757	0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs4936565	0.95[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4936566	0.81[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7113018	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73007850	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73007893	0.84[ASN][1000 genomes]
rs73007896	0.84[ASN][1000 genomes]
rs7926317	0.86[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs7939524	0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042469	chr11:120799275-120846585	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541183	chr11:120799275-120846585	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120800200-120805000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:120800200-120805000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:120800200-120808200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:120800400-120808400	Weak transcription	Brain Anterior Caudate	brain
5	chr11:120800600-120815200	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:120800800-120805000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:120801000-120811400	Weak transcription	Fetal Lung	lung
8	chr11:120802200-120805000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:120802200-120823200	Weak transcription	Ovary	ovary
10	chr11:120803400-120805600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr11:120803600-120808400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:120803800-120805000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:120803800-120805000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:120804000-120805200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links