Variant report

Variant	rs2186621
Chromosome Location	chr11:120821263-120821264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10892647	0.85[ASN][1000 genomes]
rs10892648	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10892651	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11218066	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11218068	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11218069	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11218070	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11218071	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11218072	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11218074	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11218075	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12361041	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12419730	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17124570	0.92[ASN][1000 genomes]
rs17124575	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35024210	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3781816	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3781817	0.97[ASN][1000 genomes]
rs4935757	0.99[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4936565	0.85[ASN][1000 genomes]
rs4936566	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73007850	0.81[ASN][1000 genomes]
rs73007893	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73007896	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7926317	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7939524	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042469	chr11:120799275-120846585	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541183	chr11:120799275-120846585	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120802200-120823200	Weak transcription	Ovary	ovary
2	chr11:120810400-120821600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:120818800-120821400	Weak transcription	Brain Angular Gyrus	brain
4	chr11:120819000-120822800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:120819200-120823200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:120820400-120823200	Enhancers	Brain Anterior Caudate	brain
7	chr11:120820400-120823200	Enhancers	Brain Hippocampus Middle	brain
8	chr11:120820800-120821400	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr11:120820800-120821600	Enhancers	Brain Substantia Nigra	brain
10	chr11:120820800-120821800	Enhancers	Brain Cingulate Gyrus	brain
11	chr11:120820800-120822000	Enhancers	HSMMtube	muscle
12	chr11:120821200-120822800	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links