Variant report

Variant	rs3781817
Chromosome Location	chr11:120822377-120822378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10892647	0.90[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs10892648	0.95[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs10892651	0.97[ASN][1000 genomes]
rs11218066	0.95[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs11218068	1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs11218069	1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs11218070	1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs11218071	1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs11218072	1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs11218074	0.95[ASN][1000 genomes]
rs11218075	0.95[ASN][1000 genomes]
rs11218080	0.86[CHB][hapmap]
rs12361041	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs12419730	1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs17124570	0.91[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs17124575	0.91[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs2186621	0.97[ASN][1000 genomes]
rs35024210	0.97[ASN][1000 genomes]
rs3781816	0.95[CHB][hapmap];0.86[CHD][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs4935757	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs4936565	0.86[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs4936566	0.91[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs4936568	0.86[CHB][hapmap];0.82[CHD][hapmap]
rs7113018	0.95[CHB][hapmap]
rs73007893	0.98[ASN][1000 genomes]
rs73007896	0.98[ASN][1000 genomes]
rs7926317	0.86[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs7939524	0.95[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042469	chr11:120799275-120846585	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541183	chr11:120799275-120846585	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120802200-120823200	Weak transcription	Ovary	ovary
2	chr11:120819000-120822800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:120819200-120823200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:120820400-120823200	Enhancers	Brain Anterior Caudate	brain
5	chr11:120820400-120823200	Enhancers	Brain Hippocampus Middle	brain
6	chr11:120821200-120822800	Enhancers	Fetal Muscle Leg	muscle
7	chr11:120821400-120822600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:120821400-120823200	Enhancers	Brain Angular Gyrus	brain
9	chr11:120821400-120823200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
10	chr11:120821600-120823200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:120821800-120822600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:120821800-120822800	Enhancers	Fetal Muscle Trunk	muscle
13	chr11:120822000-120822400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
14	chr11:120822000-120822600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:120822000-120823000	Weak transcription	Brain Substantia Nigra	brain
16	chr11:120822000-120823200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:120822000-120823200	Weak transcription	Spleen	Spleen
18	chr11:120822200-120823200	Weak transcription	Liver	Liver
19	chr11:120822200-120823400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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