Variant report

Variant	rs73007893
Chromosome Location	chr11:120823074-120823075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10892647	0.84[ASN][1000 genomes]
rs10892648	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10892651	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11218066	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11218068	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11218069	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11218070	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11218071	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11218072	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11218074	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11218075	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11218080	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12361041	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12419730	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17124570	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17124575	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2186621	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35024210	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3781816	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3781817	0.98[ASN][1000 genomes]
rs4935757	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4936565	0.83[ASN][1000 genomes]
rs4936566	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4936568	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73007896	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926317	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7939524	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042469	chr11:120799275-120846585	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541183	chr11:120799275-120846585	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120802200-120823200	Weak transcription	Ovary	ovary
2	chr11:120819200-120823200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:120820400-120823200	Enhancers	Brain Anterior Caudate	brain
4	chr11:120820400-120823200	Enhancers	Brain Hippocampus Middle	brain
5	chr11:120821400-120823200	Enhancers	Brain Angular Gyrus	brain
6	chr11:120821400-120823200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
7	chr11:120821600-120823200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:120822000-120823200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:120822000-120823200	Weak transcription	Spleen	Spleen
10	chr11:120822200-120823200	Weak transcription	Liver	Liver
11	chr11:120822200-120823400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:120822400-120825000	Enhancers	Brain Germinal Matrix	brain
13	chr11:120822600-120823200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:120822600-120823200	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr11:120822600-120823200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
16	chr11:120822600-120823600	Enhancers	Right Ventricle	heart
17	chr11:120822600-120823800	Enhancers	Primary hematopoietic stem cells	blood
18	chr11:120822600-120824000	Enhancers	Brain Cingulate Gyrus	brain
19	chr11:120822600-120824800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:120822800-120823200	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr11:120822800-120823200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:120822800-120823200	Enhancers	Psoas Muscle	Psoas
23	chr11:120822800-120823600	Bivalent Enhancer	Fetal Muscle Leg	muscle
24	chr11:120822800-120824200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:120822800-120824400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:120822800-120824600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr11:120822800-120825400	Enhancers	Fetal Heart	heart
28	chr11:120823000-120823200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
29	chr11:120823000-120823200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
30	chr11:120823000-120823400	Enhancers	Esophagus	oesophagus
31	chr11:120823000-120823600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:120823000-120823600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:120823000-120823600	Enhancers	Brain Substantia Nigra	brain
34	chr11:120823000-120824000	Enhancers	Primary B cells from peripheral blood	blood
35	chr11:120823000-120824000	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links